rs76141520 chr7:156640099 A>T

Sequence
ccaggcccacgaagcaggaaacac[A/T]acccgcaacgagaagcaaagggat
ASB in cell types
K562 (myelogenous leukemia)
ASB for transcription factors
ATF1_HUMAN HDAC1_HUMAN E4F1_HUMAN ETV1_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (A) ASB
color scale alt
-log10 FDR of Alt (T) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
ATF1_HUMAN 3.14 n/a 4.5·10-51.00 1.50 n/a No Hit
HDAC1_HUMAN 2.40 -3.50 2.4·10-31.00 1.50 n/a n/a
E4F1_HUMAN 2.92 -4.99 4.7·10-31.00 1.50 n/a No Hit
ETV1_HUMAN 2.92 -4.99 5.6·10-31.00 1.50 n/a No Hit
HDAC2_HUMAN 2.63 -4.57 6.8·10-31.00 1.50 n/a n/a
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Motif analysis

No data available

Genetic associations

GTEx eQTL Adipose_Subcutaneous,  Adipose_Visceral_Omentum,  Brain_Nucleus_accumbens_basal_ganglia,  Cells_Cultured_fibroblasts,  Esophagus_Muscularis,  Nerve_Tibial

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