rs76142753 chr19:20999901 G>C

Sequence
tgtccaatcagattcacagccaga[G/C]aggaaggggcggctcccggtatct
ASB in cell types
K562 (myelogenous leukemia)
ASB for transcription factors
GABP1_HUMAN PKNX1_HUMAN ZBT40_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (G) ASB
color scale alt
-log10 FDR of Alt (C) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
GABP1_HUMAN n/a 2.18 1.006.7·10-12 2.00 n/a n/a
PKNX1_HUMAN n/a 0.76 1.005.5·10-4 2.00 n/a No Hit
ZBT40_HUMAN n/a 3.48 1.005.7·10-4 2.00 n/a No Hit
Items per page:
1 – 3 of 3

Motif analysis

No data available

Genetic associations

GTEx eQTL Adipose_Subcutaneous,  Adipose_Visceral_Omentum,  Artery_Aorta,  Artery_Coronary,  Artery_Tibial,  Brain_Caudate_basal_ganglia,  Brain_Cerebellar_Hemisphere,  Brain_Hypothalamus,  Breast_Mammary_Tissue,  Cells_Cultured_fibroblasts,  Colon_Sigmoid,  Colon_Transverse,  Esophagus_Mucosa,  Esophagus_Muscularis,  Lung,  Nerve_Tibial,  Pancreas,  Skin_Sun_Exposed_Lower_leg,  Stomach,  Thyroid,  Whole_Blood

Download