rs76211385 chr12:98699059 A>G
- Sequence
aacacacttcattcctggcacagc[A/G]gagggcagcagtggcaagtcgtga
- ASB in cell types
- LNCaP (prostate carcinoma) THP-1 (acute monocytic leukemia) IMR-5 (Neuroblastoma)
- ASB for transcription factors
- CTCF_HUMAN FOXA1_HUMAN RAD21_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 3.12 | -2.16 | 1.60 | -3.16 | Concordant | |||
| FOXA1_HUMAN | 1.40 | -1.04 | 1.50 | n/a | No Hit | |||
| RAD21_HUMAN | 1.72 | n/a | 4.00 | n/a | n/a |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Artery_Tibial, Brain_Caudate_basal_ganglia, Brain_Putamen_basal_ganglia, Cells_Cultured_fibroblasts, Esophagus_Gastroesophageal_Junction, Esophagus_Muscularis, Nerve_Tibial, Skin_Sun_Exposed_Lower_leg, Testis