rs7621664 chr3:16476763 T>C

Sequence
caccatcgtgggggaaactgtttg[T/C]ttactttcagcaaatcctacaaat
ASB in cell types
HEK293 (embryonic kidney)
ASB for transcription factors
ZN629_HUMAN OSR2_HUMAN SCRT2_HUMAN ZSA5C_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (T) ASB
color scale alt
-log10 FDR of Alt (C) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
ZN629_HUMAN 4.25 n/a 3.9·10-81.00 2.00 n/a n/a
OSR2_HUMAN 3.34 n/a 6.9·10-71.00 2.00 n/a No Hit
SCRT2_HUMAN 3.61 n/a 3.9·10-41.00 2.00 n/a No Hit
ZSA5C_HUMAN 3.58 n/a 1.0·10-31.00 2.00 n/a No Hit
PRDM6_HUMAN 3.36 n/a 1.1·10-31.00 2.00 -0.27 Weak Concordant
Items per page:
1 – 5 of 11

Motif analysis

PRDM6_HUMAN Weak Concordant
PRDM6_HUMAN pic

Genetic associations

GRASP coronary artery disease (cad),  eye color,  fasting blood glucose,  homa-b,  rheumatoid arthritis,  schizophrenia
GTEx eQTL Artery_Aorta,  Artery_Tibial,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg

Download