rs76226388 chr1:96164396 A>T
- Sequence
ctggcatcatgtagaataaaaatt[A/T]caggtcagctatggcatgtcactg
- ASB in cell types
- MCF7 (Invasive ductal breast carcinoma) MDA-MB-134 (invasive lobular breast carcinoma)
- ASB for transcription factors
- ESR1_HUMAN FOXA1_HUMAN AHR_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ESR1_HUMAN | 0.09 | 1.78 | 3.21 | 0.74 | Weak Concordant | |||
| FOXA1_HUMAN | 0.23 | 1.41 | 2.18 | n/a | No Hit | |||
| AHR_HUMAN | 0.46 | 2.40 | 2.00 | n/a | No Hit |
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Motif analysis
