rs76240122 chr19:55599818 T>C
- Sequence
taacgtaaatgagagcagatacta[T/C]ttctttttcacagcctcggactcc
- ASB in cell types
- K562 (myelogenous leukemia) HEK293 (embryonic kidney) 22RV1 (prostate carcinoma)
- ASB for transcription factors
- ANDR_HUMAN SMCA4_HUMAN
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-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ANDR_HUMAN | 2.52 | -4.69 | 2.50 | 2.01 | Discordant | |||
| SMCA4_HUMAN | -0.55 | 1.83 | 1.67 | n/a | n/a |
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Motif analysis
