rs76257555 chr19:2950182 T>C
- Sequence
atctacagcggtcttatcttgtgg[T/C]tcccaaggaaacaggtcccggctg
- ASB in cell types
- K562 (myelogenous leukemia) CTV-1 (Adult T acute lymphoblastic leukemia) MOLM-13(acute monocytic leukemia(AML), Homo sapiens) BE2C
- ASB for transcription factors
- RFX1_HUMAN TAL1_HUMAN NFIC_HUMAN ARI1B_HUMAN
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-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| RFX1_HUMAN | 1.08 | n/a | 2.50 | -2.50 | Concordant | |||
| TAL1_HUMAN | 2.60 | 1.88 | 2.33 | 0.27 | Weak Concordant | |||
| NFIC_HUMAN | n/a | 0.95 | 2.00 | n/a | No Hit | |||
| ARI1B_HUMAN | n/a | 0.50 | 2.00 | n/a | n/a | |||
| ZBT11_HUMAN | -1.94 | 2.22 | 2.00 | n/a | n/a |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Artery_Aorta, Artery_Tibial, Brain_Cerebellum, Brain_Cortex, Brain_Nucleus_accumbens_basal_ganglia, Brain_Substantia_nigra, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Lung, Muscle_Skeletal, Nerve_Tibial, Pituitary, Spleen, Thyroid