rs763392 chr6:119295115 T>C
- Sequence
ccatctctctgcaaagaaaggctt[T/C]ttctaaaccaacataccatgagat
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line)
- ASB for transcription factors
- ELF1_HUMAN IKZF2_HUMAN IKZF1_HUMAN SRF_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ELF1_HUMAN | 3.21 | -3.35 | 1.00 | n/a | No Hit | |||
| IKZF2_HUMAN | 2.49 | -1.76 | 1.00 | n/a | n/a | |||
| IKZF1_HUMAN | 2.52 | -1.50 | 1.25 | n/a | n/a | |||
| SRF_HUMAN | 2.27 | n/a | 1.00 | n/a | No Hit | |||
| BMI1_HUMAN | 2.56 | n/a | 1.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GRASP birth weight, hdl cholesterol change with statins, homa-b, major depressive disorder (broad definition), major depressive disorder (broad definition) (females), major depressive disorder (narrow definition), major depressive disorder (narrow definition) (females), major depressive disorder (narrow definition) (males), recurrent early onset major depressive disorder, recurrent early onset major depressive disorder (females), total cholesterol change with statins, years of education