rs76376053 chr19:47707464 G>T
- Sequence
caggagggccctgagcgaacttag[G/T]ttccccagcaccctctggtggctg
- ASB in cell types
- HCT-116 (colon carcinoma) GBM39 (Human brain tumor)
- ASB for transcription factors
- CTCF_HUMAN RAD21_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 1.06 | 0.48 | 1.17 | n/a | No Hit | |||
| RAD21_HUMAN | 0.82 | -0.05 | 1.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Nerve_Tibial, Thyroid