rs76457020 chr17:70169388 G>A
- Sequence
cggcaggttccctccgctggcaac[G/A]cctcgcagcatcctcccctccccg
- ASB in cell types
- fetal bone marrow-derived mononuclear cells 22RV1 (prostate carcinoma) tibial nerve CD34+ hematopoietic stem cells
- ASB for transcription factors
- KMT2A_HUMAN ANDR_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| KMT2A_HUMAN | 2.56 | -4.43 | 1.50 | -3.52 | Concordant | |||
| ANDR_HUMAN | 2.67 | 0.39 | 1.50 | n/a | No Hit |
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Motif analysis
Genetic associations
GTEx eQTL Artery_Aorta, Artery_Tibial, Brain_Cerebellum, Brain_Putamen_basal_ganglia, Brain_Spinal_cord_cervical_c-1, Brain_Substantia_nigra, Cells_Cultured_fibroblasts, Esophagus_Muscularis, Heart_Left_Ventricle, Testis, Thyroid, Whole_Blood