rs76516995 chr2:127107345 C>G
- Sequence
cctgacgctccagctgcaccgccc[C/G]ggggcggggactaatccgccggcc
- ASB in cell types
- HEK293 (embryonic kidney) 22RV1 (prostate carcinoma) breast tumor
- ASB for transcription factors
- ANDR_HUMAN SP3_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ANDR_HUMAN | 2.81 | -5.04 | 2.00 | n/a | No Hit | |||
| SP3_HUMAN | 2.74 | -2.62 | 1.00 | 2.84 | Discordant |
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Motif analysis
Genetic associations
GTEx eQTL Artery_Tibial, Brain_Nucleus_accumbens_basal_ganglia, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Liver, Lung, Pancreas, Pituitary, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Stomach, Testis, Thyroid, Whole_Blood