rs76518883 chr1:223886591 G>A

Sequence
gacctacctgggggcttggtggct[G/A]aagagtgatatgccaccgaggaga
ASB in cell types
LNCaP (prostate carcinoma) LNCaP C4-2 (prostate carcinoma)
ASB for transcription factors
ANDR_HUMAN FOXA1_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (G) ASB
color scale alt
-log10 FDR of Alt (A) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
ANDR_HUMAN 2.10 -0.27 1.7·10-41.00 2.17 n/a No Hit
FOXA1_HUMAN 1.47 -0.08 1.9·10-41.00 1.45 n/a No Hit
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Motif analysis

No data available

Genetic associations

GTEx eQTL Brain_Caudate_basal_ganglia,  Brain_Cortex,  Brain_Frontal_Cortex_BA9,  Brain_Nucleus_accumbens_basal_ganglia,  Brain_Putamen_basal_ganglia,  Lung,  Skin_Not_Sun_Exposed_Suprapubic

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