rs76520574 chr16:88287421 C>T
- Sequence
ttgtgtacaaccgcaccagcggag[C/T]ccagccacctccaaaaggctgcac
- ASB in cell types
- esophagus squamous epithelium glioblastoma cells HMEC (human mammary epithelial cells) SK-N-SH (neuroblastoma)
- ASB for transcription factors
- CTCF_HUMAN SNAI2_HUMAN TIF1B_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 0.21 | 2.35 | 2.15 | n/a | No Hit | |||
| SNAI2_HUMAN | -0.63 | 1.57 | 1.50 | n/a | No Hit | |||
| TIF1B_HUMAN | 1.64 | 0.27 | 2.00 | n/a | n/a |
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