rs76541753 chr14:96362217 G>T

Sequence
ggcataactcaacagcactactag[G/T]gccagacgaccattcacaggctgg
ASB in cell types
MCF7 (Invasive ductal breast carcinoma) 22RV1 (prostate carcinoma)
ASB for transcription factors
ANDR_HUMAN FOXA1_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (G) ASB
color scale alt
-log10 FDR of Alt (T) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
ANDR_HUMAN 2.56 -4.79 0.021.00 2.00 2.29 Discordant
FOXA1_HUMAN 0.09 0.72 1.000.04 1.45 n/a No Hit
Items per page:
1 – 2 of 2

Motif analysis

ANDR_HUMAN Discordant
ANDR_HUMAN pic

Genetic associations

GTEx eQTL Adipose_Subcutaneous,  Cells_Cultured_fibroblasts,  Lung,  Muscle_Skeletal,  Nerve_Tibial,  Skin_Not_Sun_Exposed_Suprapubic

Download