rs76620182 chr6:30781812 G>A
- Sequence
gctcagacttacgttttctgactt[G/A]gagtacagtgctccgctctcacgt
- ASB in cell types
- 22RV1 (prostate carcinoma) HCASMC (Human coronary artery smooth muscle cells)
- ASB for transcription factors
- ANDR_HUMAN TCF21_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ANDR_HUMAN | 3.38 | n/a | 2.00 | n/a | No Hit | |||
| TCF21_HUMAN | 2.67 | n/a | 3.00 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Artery_Tibial, Brain_Cerebellum, Brain_Hippocampus, Cells_Cultured_fibroblasts, Esophagus_Muscularis, Heart_Atrial_Appendage, Liver, Muscle_Skeletal, Skin_Sun_Exposed_Lower_leg, Spleen, Testis, Thyroid, Whole_Blood