rs766360 chr3:143001506 G>A

Sequence
acgtgagcggctgcccctaaggtc[G/A]ctatctcgacagtcgactattcag
ASB in cell types
HepG2 (hepatoblastoma) MCF7 (Invasive ductal breast carcinoma) thymus-derived CD34+ cells HEK293T (embryonic kidney)
ASB for transcription factors
COT1_HUMAN RBM25_HUMAN NR2F6_HUMAN HNF4A_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (G) ASB
color scale alt
-log10 FDR of Alt (A) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
COT1_HUMAN -3.35 3.60 1.001.4·10-6 1.00 4.04 Concordant
RBM25_HUMAN -0.13 2.49 0.932.6·10-5 2.00 n/a n/a
NR2F6_HUMAN -2.82 2.92 1.002.9·10-5 1.42 3.98 Concordant
HNF4A_HUMAN -0.11 2.10 1.001.3·10-4 1.38 n/a No Hit
BC11B_HUMAN 0.16 3.79 0.762.0·10-4 2.00 n/a n/a
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Motif analysis

COT1_HUMAN Concordant
COT1_HUMAN pic

Genetic associations

GRASP cystatin c in serum,  infant head circumference,  serum creatinine
GTEx eQTL Cells_Cultured_fibroblasts,  Muscle_Skeletal,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Testis,  Thyroid

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