rs76660458 chr1:11908295 A>T
- Sequence
ttattttaagtgttttaaaaacag[A/T]tgcgattccgttaaatcgcgtgtg
- ASB in cell types
- foreskin keratinocyte Th2-cells
- ASB for transcription factors
- CTCF_HUMAN MAF_HUMAN ERCC2_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 2.51 | 0.01 | 2.38 | n/a | No Hit | |||
| MAF_HUMAN | 2.31 | n/a | 2.50 | n/a | No Hit | |||
| ERCC2_HUMAN | -1.63 | 2.19 | 1.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Brain_Nucleus_accumbens_basal_ganglia, Brain_Spinal_cord_cervical_c-1, Cells_Cultured_fibroblasts, Heart_Left_Ventricle, Nerve_Tibial, Skin_Sun_Exposed_Lower_leg, Thyroid, Whole_Blood