ADASTRA v6.1.0
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rs766890
chr1:235972381
T
>
C
Sequence
tttccctgttaaatcaagtttagc[T/C]taaagctactcacatattttaagt
ASB in cell types
GM12878 (female B-cells lymphoblastoid cell line)
ASB for transcription factors
IKZF1_HUMAN
MEF2B_HUMAN
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View in UCSC Genome Browser
View in PheLiGe
0.05
FDR threshold
0
ES threshold
Color scale
-log10 FDR of Ref (
T
) ASB
-log10 FDR of Alt (
C
) ASB
Details
Transcription factors
Cell types
Effect size Ref
(+6 others)
Selected columns
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Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
IKZF1_HUMAN
-2.33
2.40
1.00
5.3·10
-4
1.00
n/a
n/a
MEF2B_HUMAN
-1.66
2.18
1.00
0.05
1.00
n/a
No Hit
Items per page:
5
1 – 2 of 2
Motif analysis
No data available
Genetic associations
GRASP
ldl cholesterol
,
waist hip ratio
GTEx eQTL
Adipose_Subcutaneous
,
Adipose_Visceral_Omentum
,
Artery_Tibial
,
Colon_Sigmoid
,
Nerve_Tibial
,
Skin_Sun_Exposed_Lower_leg
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Generated by ADASTRA database
2024.11.16 v6.1.0 Mabel
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SNP set annotation with ANANASTRA
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+/-100bp
log2-scale
log2(Alt/Ref motif p-value)