rs76692654 chr15:80999823 T>G

Sequence
tagaggacctgtttcaggactgcg[T/G]gactggcgttttgctgggagtagc
ASB in cell types
CTV-1 (Adult T acute lymphoblastic leukemia) 22RV1 (prostate carcinoma)
ASB for transcription factors
SPI1_HUMAN ANDR_HUMAN ETS1_HUMAN FLI1_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (T) ASB
color scale alt
-log10 FDR of Alt (G) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
SPI1_HUMAN 1.23 0.56 1.1·10-31.00 1.00 n/a No Hit
ANDR_HUMAN 2.33 -4.84 5.6·10-31.00 2.83 n/a No Hit
ETS1_HUMAN 1.68 -0.36 0.011.00 1.00 n/a No Hit
FLI1_HUMAN 1.27 -0.89 0.031.00 1.00 n/a No Hit
SMCA4_HUMAN 1.24 0.37 0.040.91 1.00 n/a n/a
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Motif analysis

No data available

Genetic associations

GTEx eQTL Adipose_Subcutaneous,  Adipose_Visceral_Omentum,  Artery_Aorta,  Brain_Caudate_basal_ganglia,  Brain_Cerebellum,  Brain_Hippocampus,  Breast_Mammary_Tissue,  Cells_Cultured_fibroblasts,  Colon_Transverse,  Esophagus_Mucosa,  Esophagus_Muscularis,  Heart_Atrial_Appendage,  Lung,  Nerve_Tibial,  Pancreas,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Stomach,  Testis,  Thyroid

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