rs768498 chr10:69438728 G>A
- Sequence
gctgccgctgagctgagctcagta[G/A]acaggaacgaggaagttaaaatgc
- ASB in cell types
- CFPAC-1(pancreatic ductal adenocarcinoma) K562 (myelogenous leukemia)
- ASB for transcription factors
- FOXA1_HUMAN FOXA2_HUMAN ZNF24_HUMAN FOXK2_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| FOXA1_HUMAN | -0.17 | 2.12 | 1.83 | 7.83 | Concordant | |||
| FOXA2_HUMAN | -1.06 | 2.44 | 1.00 | 7.03 | Concordant | |||
| ZNF24_HUMAN | -1.71 | 2.27 | 1.17 | n/a | No Hit | |||
| FOXK2_HUMAN | -1.98 | 1.85 | 1.00 | 4.70 | Concordant |
Items per page:
1 – 4 of 4
Motif analysis
Genetic associations
GRASP arthritis including non-rheumatoid, college completion, eye color, fasting blood glucose, total cholesterol, years of education
GTEx eQTL Brain_Caudate_basal_ganglia, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Cells_Cultured_fibroblasts, Esophagus_Mucosa, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Minor_Salivary_Gland, Nerve_Tibial, Pituitary, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Testis, Thyroid, Whole_Blood