rs76883690 chr1:20367341 G>T
- Sequence
cagtcccaccgctggaggcgcagg[G/T]ctcagaccttgaatctcgtggctc
- ASB in cell types
- MCF10A (breast epithelial cells) HuCCT1 (intrahepatic cholangiocarcinoma) thyroid gland MCF10CA1a (breast metastatic epithelial cells)
- ASB for transcription factors
- CTCF_HUMAN SMC1A_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 1.39 | 1.21 | 1.25 | n/a | No Hit | |||
| SMC1A_HUMAN | n/a | 2.49 | 2.00 | n/a | n/a |
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