rs768878 chr8:102789329 C>T

Sequence
ctgcctctcccgcactggggactg[C/T]ccccagaagcctgaattgttttca
ASB in cell types
HUVEC-C (HUVEC, umbilical vein endothelial cells) HAEC (human aortic endothelial cells) breast tumor
ASB for transcription factors
TF65_HUMAN SUH_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (C) ASB
color scale alt
-log10 FDR of Alt (T) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
TF65_HUMAN 2.06 -0.34 3.0·10-71.00 2.17 1.18 Weak Discordant
SUH_HUMAN 2.64 0.68 0.030.87 1.50 n/a No Hit
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Motif analysis

TF65_HUMAN Weak Discordant
TF65_HUMAN pic

Genetic associations

GRASP advanced age-related macular degeneration (geographic atrophy),  college completion,  hdl cholesterol change with statins,  years of education

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