rs769238 chr4:121823787 G>A
- Sequence
cccgcccgctcgctcacccagctc[G/A]agaccacgcagggccgaggaggtt
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line) 22RV1 (prostate carcinoma) MCF7 (Invasive ductal breast carcinoma)
- ASB for transcription factors
- FOXK2_HUMAN ANDR_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| FOXK2_HUMAN | 2.76 | -2.64 | 1.00 | n/a | No Hit | |||
| ANDR_HUMAN | 2.06 | n/a | 2.00 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GRASP college completion, height, ldl cholesterol, total cholesterol, urinary albumin-to-creatinine ratio, years of education
GTEx eQTL Adipose_Subcutaneous, Brain_Frontal_Cortex_BA9, Cells_Cultured_fibroblasts, Cells_EBV-transformed_lymphocytes, Esophagus_Muscularis, Heart_Atrial_Appendage, Muscle_Skeletal, Nerve_Tibial, Testis, Whole_Blood