rs772570 chr12:62914754 G>T

Sequence
atgctcaaatatactggccagaac[G/T]agtcacatggactcatctacctac
ASB in cell types
K562 (myelogenous leukemia)
ASB for transcription factors
ZFP91_HUMAN LMBL2_HUMAN MGAP_HUMAN NFE2_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (G) ASB
color scale alt
-log10 FDR of Alt (T) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
ZFP91_HUMAN n/a 4.19 1.004.6·10-6 2.00 n/a No Hit
LMBL2_HUMAN n/a 3.79 1.002.7·10-5 2.00 n/a n/a
MGAP_HUMAN n/a 3.73 1.001.5·10-4 2.00 n/a No Hit
NFE2_HUMAN -5.27 3.09 1.003.8·10-3 2.00 -2.65 Discordant
Items per page:
1 – 4 of 4

Motif analysis

NFE2_HUMAN Discordant
NFE2_HUMAN pic

Genetic associations

GRASP advanced age-related macular degeneration (geographic atrophy),  ldl cholesterol,  refractive error,  sporadic creutzfeldt-jakob disease,  stabilized warfarin dose
GTEx eQTL Artery_Tibial,  Muscle_Skeletal,  Skin_Sun_Exposed_Lower_leg

Download