rs77540645 chr6:26286520 C>T
- Sequence
agtactgtgagaccgtgtgcctgg[C/T]agaacagcagagtggcgcagcgga
- ASB in cell types
- 22RV1 (prostate carcinoma) MDA-MB-231-1833 (breast cancer cells, bone-tropic metastatic line) T47D (invasive ductal carcinoma) epidermal stem cells
- ASB for transcription factors
- ANDR_HUMAN JUN_HUMAN BDP1_HUMAN DNM3A_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ANDR_HUMAN | 2.61 | -4.79 | 2.00 | -0.21 | Weak Concordant | |||
| JUN_HUMAN | 1.69 | 0.64 | 1.20 | n/a | No Hit | |||
| BDP1_HUMAN | 2.25 | 0.03 | 2.00 | n/a | n/a | |||
| DNM3A_HUMAN | 1.65 | -1.04 | 1.00 | n/a | n/a | |||
| STAT1_HUMAN | 0.95 | -0.63 | 2.50 | n/a | No Hit |
Items per page:
1 – 5 of 5
Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Caudate_basal_ganglia, Brain_Cerebellum, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Hippocampus, Brain_Hypothalamus, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Brain_Substantia_nigra, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Liver, Lung, Muscle_Skeletal, Nerve_Tibial, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Spleen, Stomach, Testis, Thyroid, Whole_Blood