rs7761544 chr6:158814311 G>T
- Sequence
ccagccctcaagcaagattcagct[G/T]aagtgttacttctcaatacagtct
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line) GM19240 (B cells Lymphoblastoid Cell Lines) K562 (myelogenous leukemia) OCI-LY7 (diffuse large B-cell lymphoma)
- ASB for transcription factors
- CTCF_HUMAN STAG1_HUMAN FOXP1_HUMAN IKZF2_HUMAN
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 2.60 | 0.49 | 1.60 | n/a | No Hit | |||
| STAG1_HUMAN | 2.13 | 0.26 | 1.48 | n/a | n/a | |||
| FOXP1_HUMAN | 2.82 | -2.48 | 1.00 | n/a | No Hit | |||
| IKZF2_HUMAN | 1.53 | -1.03 | 1.00 | n/a | n/a | |||
| STAT1_HUMAN | 1.95 | -1.03 | 1.75 | 1.47 | Weak Discordant |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Artery_Aorta, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Esophagus_Mucosa, Esophagus_Muscularis, Liver, Pancreas, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Testis, Thyroid