rs7762197 chr6:125953792 C>T
- Sequence
tgagctgagcgcagcctgctggtc[C/T]gagtgggtggaacaagcccagtgg
- ASB in cell types
- GM19099 (female B-cells Lymphoblastoid Cell Lines) ID00014 (lymphoblastoid cell, DiGeorge syndrome) GM19240 (B cells Lymphoblastoid Cell Lines)
- ASB for transcription factors
- STAG1_HUMAN CTCF_HUMAN STAG2_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| STAG1_HUMAN | -1.88 | 1.92 | 2.00 | n/a | n/a | |||
| CTCF_HUMAN | 0.84 | 2.83 | 1.59 | 0.00 | Weak Discordant | |||
| STAG2_HUMAN | -0.93 | 2.10 | 1.00 | n/a | n/a |
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Motif analysis
