rs776698 chr15:42057552 C>T
- Sequence
tagacaaagatgatgtaaaacacc[C/T]gcgtcagggttgtgacatcctcct
- ASB in cell types
- keratinocytes SUM159PT (Triple negative breast cancer) HUVEC-C (HUVEC, umbilical vein endothelial cells) CD14+ monocytes
- ASB for transcription factors
- SNAI2_HUMAN STAT1_HUMAN TF65_HUMAN CEBPB_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| SNAI2_HUMAN | -4.57 | 2.81 | 1.50 | 4.36 | Concordant | |||
| STAT1_HUMAN | 2.84 | n/a | 2.00 | n/a | No Hit | |||
| TF65_HUMAN | 2.33 | 0.19 | 2.50 | n/a | No Hit | |||
| CEBPB_HUMAN | 1.46 | -0.53 | 1.21 | n/a | No Hit |
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Motif analysis
