rs7777812 chr7:129740581 C>T
- Sequence
tttctgtcactcctcaggcatacc[C/T]cccgtagctggagggatttccagt
- ASB in cell types
- HEK293 (embryonic kidney)
- ASB for transcription factors
- GLIS1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| GLIS1_HUMAN | 2.76 | -0.73 | 2.00 | 0.01 | Weak Discordant |
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Motif analysis
Genetic associations
GRASP biploar disorder (bipolar schizoaffective disorder), bipolar disorder, gender differentiated, college completion, diastolic blood pressure (dbp), major depressive disorder, major depressive disorder (females), recurrent early onset major depressive disorder, triglycerides
GTEx eQTL Brain_Hypothalamus, Brain_Spinal_cord_cervical_c-1, Muscle_Skeletal, Nerve_Tibial, Thyroid