rs7778379 chr7:28360949 A>C
- Sequence
atgtctacagacatttttagttgt[A/C]accactgaggggcagggtgctacc
- ASB in cell types
- RH4 (alveolar rhabdomyosarcoma) GM18505 (female B-cells Lymphoblastoid Cell Lines) glioblastoma patient-derived cell model 2588 (Lymphoblastoid Cell Lines)
- ASB for transcription factors
- CTCF_HUMAN STAG1_HUMAN RAD21_HUMAN
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-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | -0.02 | 1.93 | 1.28 | 0.33 | Weak Concordant | |||
| STAG1_HUMAN | 0.23 | 2.17 | 1.07 | n/a | n/a | |||
| RAD21_HUMAN | -0.20 | 2.13 | 1.14 | n/a | n/a |
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Motif analysis
