rs7781295 chr7:130894403 G>A
- Sequence
gtcacgagggcagagagacccaaa[G/A]gatcagagaacagctctgagcagg
- ASB in cell types
- breast tumor ZR-75-1 (invasive ductal carcinoma) HCT-116 (colon carcinoma) HCASMC (Human coronary artery smooth muscle cells)
- ASB for transcription factors
- ESR1_HUMAN TCF21_HUMAN SNF5_HUMAN
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ESR1_HUMAN | 2.62 | 0.67 | 2.50 | n/a | No Hit | |||
| TCF21_HUMAN | 2.55 | n/a | 2.50 | n/a | No Hit | |||
| SNF5_HUMAN | -0.96 | 2.04 | 1.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adrenal_Gland, Artery_Aorta, Artery_Tibial, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Hypothalamus, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Nerve_Tibial, Pancreas, Pituitary, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Testis, Thyroid