rs7786074 chr7:128880237 A>T
- Sequence
ctgtgagtgaggtcagggcaccac[A/T]tcgtggtcgcactgggaacagcac
- ASB in cell types
- WA09 (embryonic stem cells) 22RV1 (prostate carcinoma) GM18951 (B-cells Lymphoblastoid Cell Lines) GM19240 (B cells Lymphoblastoid Cell Lines)
- ASB for transcription factors
- CTCF_HUMAN STAG1_HUMAN IKZF1_HUMAN
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-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 1.77 | 0.33 | 1.33 | 0.12 | Weak Discordant | |||
| STAG1_HUMAN | 1.71 | 0.11 | 1.26 | n/a | n/a | |||
| IKZF1_HUMAN | 2.27 | -2.27 | 1.00 | n/a | n/a |
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Motif analysis
Genetic associations
GRASP fasting insulin, hdl cholesterol, left ventricular diastolic dimensions (lv diastolic dimensions), microalbuminuria, parkinsons disease, refractive error, years of education
GTEx eQTL Adipose_Visceral_Omentum, Artery_Tibial, Brain_Anterior_cingulate_cortex_BA24, Brain_Caudate_basal_ganglia, Brain_Cerebellum, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Nucleus_accumbens_basal_ganglia, Nerve_Tibial, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg