rs7786299 chr7:156988991 G>A
- Sequence
acgatgcttggccccaggacttcc[G/A]tggccccctcctcactctccccag
- ASB in cell types
- HepG2 (hepatoblastoma)
- ASB for transcription factors
- ETV5_HUMAN NR2F6_HUMAN SKI_HUMAN GATD1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ETV5_HUMAN | 3.67 | n/a | 1.00 | -3.20 | Concordant | |||
| NR2F6_HUMAN | 2.66 | -4.57 | 1.50 | n/a | No Hit | |||
| SKI_HUMAN | 2.54 | -2.58 | 1.00 | n/a | n/a | |||
| GATD1_HUMAN | 2.36 | -2.38 | 1.00 | n/a | n/a | |||
| ARI4B_HUMAN | 2.27 | n/a | 1.00 | n/a | n/a |
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Motif analysis
Genetic associations
GTEx eQTL Artery_Tibial, Brain_Anterior_cingulate_cortex_BA24, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Brain_Hippocampus, Brain_Hypothalamus, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Cells_Cultured_fibroblasts, Heart_Left_Ventricle, Muscle_Skeletal, Skin_Not_Sun_Exposed_Suprapubic, Spleen