rs7787526 chr7:76318236 C>T
- Sequence
ggggctacatacacagccgtggtc[C/T]cgcccggcccacatccgggcttcc
- ASB in cell types
- A549 (lung carcinoma) 22RV1 (prostate carcinoma)
- ASB for transcription factors
- HDAC1_HUMAN ANDR_HUMAN JUN_HUMAN PRD10_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| HDAC1_HUMAN | 2.00 | -0.08 | 1.00 | n/a | n/a | |||
| ANDR_HUMAN | 1.77 | -0.77 | 1.67 | n/a | No Hit | |||
| JUN_HUMAN | -0.18 | 1.25 | 1.92 | n/a | No Hit | |||
| PRD10_HUMAN | -1.86 | 2.40 | 1.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Tibial, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Hypothalamus, Brain_Nucleus_accumbens_basal_ganglia, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Lung, Nerve_Tibial, Pituitary, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Testis, Thyroid, Vagina, Whole_Blood