rs7788000 chr7:22083104 G>T
- Sequence
gctgcacagcaacccagcgcggcg[G/T]ggggagtggcctggggccattctc
- ASB in cell types
- K562 (myelogenous leukemia) Kelly (neuroblastoma) A549 (lung carcinoma) SYO-1(Biphasic synovial sarcoma)
- ASB for transcription factors
- VEZF1_HUMAN ILF3_HUMAN TIF1B_HUMAN MNT_HUMAN
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| VEZF1_HUMAN | 2.98 | -5.21 | 2.00 | -2.30 | Concordant | |||
| ILF3_HUMAN | 2.68 | -5.02 | 2.00 | n/a | n/a | |||
| TIF1B_HUMAN | 2.47 | n/a | 2.00 | n/a | n/a | |||
| MNT_HUMAN | 2.00 | -0.48 | 1.67 | n/a | No Hit | |||
| MGAP_HUMAN | 2.88 | -5.39 | 2.00 | n/a | No Hit |
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Motif analysis
