rs7788145 chr7:22083175 G>C
- Sequence
accaccgtgcgctgccagagggga[G/C]gctgcgggaatggccagcgaggtc
- ASB in cell types
- K562 (myelogenous leukemia) GM12878 (female B-cells lymphoblastoid cell line) gastroesophageal sphincter SH-SY5Y (neuroblastoma)
- ASB for transcription factors
- CTCF_HUMAN ZN341_HUMAN FOXK2_HUMAN VEZF1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 0.59 | 1.24 | 1.34 | 0.91 | Weak Concordant | |||
| ZN341_HUMAN | 2.12 | -3.63 | 1.17 | -1.90 | Weak Concordant | |||
| FOXK2_HUMAN | 3.67 | n/a | 1.00 | n/a | No Hit | |||
| VEZF1_HUMAN | 3.33 | n/a | 2.00 | -1.24 | Weak Concordant | |||
| ATF7_HUMAN | 2.84 | -5.17 | 2.00 | n/a | No Hit |
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Motif analysis
