rs7790898 chr7:44922251 T>C
- Sequence
tcagcaagaatgccatgtggagcc[T/C]gtcaactagcccgtcaactagcac
- ASB in cell types
- neutrophils from periferal blood SK-N-SH (neuroblastoma) adult erythroblasts GM12878 (female B-cells lymphoblastoid cell line)
- ASB for transcription factors
- KDM6A_HUMAN PKNX1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| KDM6A_HUMAN | n/a | 2.86 | 2.50 | n/a | n/a | |||
| PKNX1_HUMAN | 2.21 | 0.41 | 1.50 | 0.48 | Weak Discordant |
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Motif analysis
