rs7793259 chr7:44848760 C>T
- Sequence
tcgcgccactgcactccagctggg[C/T]gacgcatcgtctcaaaacaaacaa
- ASB in cell types
- HEK293 (embryonic kidney) GM12878 (female B-cells lymphoblastoid cell line) MCF7 (Invasive ductal breast carcinoma)
- ASB for transcription factors
- CREB1_HUMAN IKZF2_HUMAN ZN558_HUMAN ZN335_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CREB1_HUMAN | -0.65 | 2.37 | 1.88 | 4.26 | Concordant | |||
| IKZF2_HUMAN | -1.40 | 1.95 | 1.00 | n/a | n/a | |||
| ZN558_HUMAN | -2.92 | 2.81 | 1.00 | n/a | No Hit | |||
| ZN335_HUMAN | n/a | 2.12 | 2.00 | n/a | No Hit | |||
| ANDR_HUMAN | n/a | 2.43 | 1.75 | n/a | No Hit |
Items per page:
1 – 5 of 6
Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Artery_Aorta, Artery_Tibial, Muscle_Skeletal, Nerve_Tibial, Skin_Sun_Exposed_Lower_leg, Thyroid