rs7794069 chr7:90578177 G>A

Sequence
acaggcgtgcaccacctgtgtgcc[G/A]cctgctctacaggtggcacacacc
ASB in cell types
keratinocytes
ASB for transcription factors
SNAI2_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (G) ASB
color scale alt
-log10 FDR of Alt (A) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
SNAI2_HUMAN -3.93 2.90 1.001.1·10-6 1.50 4.68 Concordant
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Motif analysis

SNAI2_HUMAN Concordant
SNAI2_HUMAN pic

Genetic associations

GRASP advanced age-related macular degeneration (geographic atrophy),  triglycerides
GTEx eQTL Adipose_Subcutaneous,  Adipose_Visceral_Omentum,  Artery_Aorta,  Artery_Tibial,  Brain_Cerebellar_Hemisphere,  Brain_Cerebellum,  Breast_Mammary_Tissue,  Cells_Cultured_fibroblasts,  Esophagus_Mucosa,  Heart_Left_Ventricle,  Lung,  Nerve_Tibial,  Pituitary,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Spleen,  Thyroid,  Whole_Blood

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