rs7796085 chr7:19587501 A>G
- Sequence
gagggatgtggcaaggaacttagg[A/G]tgacctctaggggctgagtgtggt
- ASB in cell types
- MS-1 (Small cell lung carcinoma) GM12892 (female B-cells lymphoblastoid cell line) GM23338 neural progenitors
- ASB for transcription factors
- CTCF_HUMAN CTCFL_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | -0.26 | 2.52 | 2.08 | 2.67 | Concordant | |||
| CTCFL_HUMAN | -1.09 | 1.90 | 2.00 | 2.70 | Concordant |
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Motif analysis
