rs7796976 chr7:17298806 A>G
- Sequence
gcaggcgggaagcaccctggattt[A/G]ggaagtcccgggagcagcgcggcg
- ASB in cell types
- CD14+ monocytes HEK293 (embryonic kidney) HepG2 (hepatoblastoma)
- ASB for transcription factors
- TYY1_HUMAN STAT1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| TYY1_HUMAN | -0.54 | 3.84 | 1.00 | n/a | No Hit | |||
| STAT1_HUMAN | n/a | 3.42 | 2.00 | -0.02 | Weak Discordant |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Brain_Caudate_basal_ganglia, Brain_Spinal_cord_cervical_c-1, Brain_Substantia_nigra, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Heart_Atrial_Appendage, Heart_Left_Ventricle, Nerve_Tibial, Testis, Thyroid