rs7797854 chr7:150765810 A>C
- Sequence
gatcaacgaagggaaagaaaaaca[A/C]ggatcggaacacacagaagaacaa
- ASB in cell types
- LNCaP (prostate carcinoma) HepG2 (hepatoblastoma) VCaP (prostate carcinoma) primary endothelial colony-forming cells
- ASB for transcription factors
- FOXA1_HUMAN FOXA2_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| FOXA1_HUMAN | 2.28 | -0.37 | 1.47 | n/a | No Hit | |||
| FOXA2_HUMAN | 1.49 | -0.48 | 1.50 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Transverse, Lung, Muscle_Skeletal, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Thyroid, Whole_Blood