rs7798520 chr7:2857776 C>A
- Sequence
accgtgttccacggatatttacag[C/A]agccactgattgtctgcgtcccct
- ASB in cell types
- HepG2 (hepatoblastoma) VCaP (prostate carcinoma) 22RV1 (prostate carcinoma)
- ASB for transcription factors
- FOXA1_HUMAN FOXA2_HUMAN ANDR_HUMAN SKI_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| FOXA1_HUMAN | -0.79 | 2.57 | 2.00 | 3.07 | Concordant | |||
| FOXA2_HUMAN | n/a | 1.02 | 1.50 | 2.65 | Concordant | |||
| ANDR_HUMAN | 2.11 | -0.81 | 2.00 | n/a | No Hit | |||
| SKI_HUMAN | -2.00 | 2.37 | 1.00 | n/a | n/a |
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Motif analysis
