rs7799097 chr7:44915217 C>T
- Sequence
ccaggaagtgtgctcgtatgtgtg[C/T]gtaagcatgcataagtgtgcgtag
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line) GM19238 (female B-cells lymphoblastoid cell lines) GM12892 (female B-cells lymphoblastoid cell line) GM12891 (male B- cells lymphoblastoid cell line)
- ASB for transcription factors
- IKZF2_HUMAN CTCF_HUMAN MTA2_HUMAN MEF2B_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| IKZF2_HUMAN | 2.56 | -0.57 | 1.00 | n/a | n/a | |||
| CTCF_HUMAN | 2.06 | -1.23 | 2.33 | n/a | No Hit | |||
| MTA2_HUMAN | 3.04 | -2.83 | 1.00 | n/a | n/a | |||
| MEF2B_HUMAN | 2.83 | -2.82 | 1.00 | n/a | No Hit | |||
| IKZF1_HUMAN | 2.31 | 0.53 | 2.50 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Tibial, Brain_Caudate_basal_ganglia, Brain_Cerebellum, Brain_Cortex, Brain_Nucleus_accumbens_basal_ganglia, Cells_Cultured_fibroblasts, Muscle_Skeletal, Whole_Blood