rs7799132 chr7:90154581 C>T
- Sequence
atcgttctcactggccgtttgctc[C/T]tcgagtccgcccgcgtgtccctgc
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line) HEK293 (embryonic kidney) K562 (myelogenous leukemia) upper lobe of left lung
- ASB for transcription factors
- CTCF_HUMAN ZBT26_HUMAN IKZF2_HUMAN MGAP_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 2.59 | -0.70 | 1.08 | n/a | No Hit | |||
| ZBT26_HUMAN | 2.46 | -2.46 | 1.00 | n/a | No Hit | |||
| IKZF2_HUMAN | 2.45 | -2.62 | 1.00 | n/a | n/a | |||
| MGAP_HUMAN | 2.21 | -2.00 | 1.00 | n/a | No Hit | |||
| ZN687_HUMAN | 2.83 | -2.82 | 1.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Hippocampus, Brain_Hypothalamus, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Brain_Spinal_cord_cervical_c-1, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Minor_Salivary_Gland, Muscle_Skeletal, Nerve_Tibial, Ovary, Pancreas, Pituitary, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Stomach, Testis, Thyroid, Whole_Blood