rs7799332 chr7:44915187 G>A
- Sequence
cagacacgcgagcgcccatttggg[G/A]ctgtcccaggaagtgtgctcgtat
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line) L1236 (Hodgkin lymphoma) GM12892 (female B-cells lymphoblastoid cell line)
- ASB for transcription factors
- IKZF2_HUMAN MEF2B_HUMAN MTA2_HUMAN NFKB1_HUMAN
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| IKZF2_HUMAN | 2.94 | -1.65 | 1.00 | n/a | n/a | |||
| MEF2B_HUMAN | 2.76 | -2.64 | 1.00 | -2.19 | Concordant | |||
| MTA2_HUMAN | 2.81 | -2.51 | 1.00 | n/a | n/a | |||
| NFKB1_HUMAN | 2.65 | n/a | 1.00 | -0.99 | Weak Concordant | |||
| NFAC3_HUMAN | 2.47 | n/a | 1.00 | n/a | No Hit |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Tibial, Brain_Caudate_basal_ganglia, Brain_Cerebellum, Brain_Cortex, Brain_Nucleus_accumbens_basal_ganglia, Cells_Cultured_fibroblasts, Muscle_Skeletal, Whole_Blood