rs7802537 chr7:140656752 A>G

Sequence
gtgaaagtaagagcaggttcgccg[A/G]cagacacagagttaaaggggaagt
ASB in cell types
LNCaP (prostate carcinoma) MDM(monocyte derived macrophages) macrophages
ASB for transcription factors
GRHL2_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (A) ASB
color scale alt
-log10 FDR of Alt (G) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
GRHL2_HUMAN -3.31 2.02 1.007.1·10-3 1.50 -0.11 Weak Discordant
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Motif analysis

GRHL2_HUMAN Weak Discordant
GRHL2_HUMAN pic

Genetic associations

GRASP advanced age-related macular degeneration,  advanced age-related macular degeneration (choroidal neovascularization) vs. no amd,  microalbuminuria,  serum creatinine,  total cholesterol change with statins,  triglycerides,  triglycerides change with statins,  urinary albumin-to-creatinine ratio
GTEx eQTL Adipose_Subcutaneous,  Adipose_Visceral_Omentum,  Artery_Aorta,  Artery_Tibial,  Brain_Cortex,  Breast_Mammary_Tissue,  Cells_Cultured_fibroblasts,  Colon_Transverse,  Lung,  Nerve_Tibial,  Pancreas,  Whole_Blood

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