rs78053102 chr6:26286498 T>A
- Sequence
gcatctcctgtaagtagttaagag[T/A]actgtgagaccgtgtgcctggcag
- ASB in cell types
- CD14+ monocytes 22RV1 (prostate carcinoma) T47D (invasive ductal carcinoma) MDA-MB-231-1833 (breast cancer cells, bone-tropic metastatic line)
- ASB for transcription factors
- ANDR_HUMAN STAT1_HUMAN BDP1_HUMAN DNM3A_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ANDR_HUMAN | 2.44 | -4.91 | 2.00 | 1.32 | Weak Discordant | |||
| STAT1_HUMAN | 2.50 | 0.78 | 2.50 | n/a | No Hit | |||
| BDP1_HUMAN | 1.93 | -0.82 | 2.00 | n/a | n/a | |||
| DNM3A_HUMAN | 1.85 | -1.10 | 1.00 | n/a | n/a | |||
| JUN_HUMAN | 1.34 | 1.10 | 1.20 | n/a | No Hit |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Caudate_basal_ganglia, Brain_Cerebellum, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Hippocampus, Brain_Hypothalamus, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Brain_Substantia_nigra, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Liver, Lung, Muscle_Skeletal, Nerve_Tibial, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Spleen, Stomach, Testis, Thyroid, Whole_Blood