rs7809988 chr7:149854688 G>C

Sequence
ggctctgagctcacttatgctgtt[G/C]ccagaatctagctccttgcggttc
ASB in cell types
22RV1 (prostate carcinoma)
ASB for transcription factors
ANDR_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (G) ASB
color scale alt
-log10 FDR of Alt (C) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
ANDR_HUMAN 2.95 n/a 7.7·10-31.00 2.00 6.13 Discordant
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Motif analysis

ANDR_HUMAN Discordant
ANDR_HUMAN pic

Genetic associations

GRASP aortic valve calcium,  parkinsons disease,  triglycerides
GTEx eQTL Adipose_Subcutaneous,  Adipose_Visceral_Omentum,  Artery_Aorta,  Artery_Tibial,  Brain_Cerebellum,  Brain_Cortex,  Brain_Frontal_Cortex_BA9,  Cells_Cultured_fibroblasts,  Colon_Sigmoid,  Esophagus_Muscularis,  Heart_Atrial_Appendage,  Nerve_Tibial,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Testis,  Thyroid

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