rs7811725 chr7:96238660 A>G

Sequence
tatagacttctgaagccggacaga[A/G]gacaaatgtgtttctggccctttg
ASB in cell types
K562 (myelogenous leukemia)
ASB for transcription factors
PKNX1_HUMAN PBX2_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (A) ASB
color scale alt
-log10 FDR of Alt (G) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
PKNX1_HUMAN 2.64 -4.42 3.3·10-41.00 1.50 n/a No Hit
PBX2_HUMAN 3.02 -5.02 1.1·10-31.00 1.50 n/a No Hit
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Motif analysis

No data available

Genetic associations

GRASP chronic kidney disease,  hdl cholesterol,  homa-ir,  ldl cholesterol,  neuroticism
GTEx eQTL Brain_Cerebellar_Hemisphere,  Brain_Cerebellum,  Lung,  Pituitary,  Spleen,  Whole_Blood

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